{ "_id": "6a1adbf21d7bb097a09e934f", "Package": "streamDAG", "Version": "1.6-1", "Date": "2025-11-25", "Title": "Analytical Methods for Stream DAGs", "Maintainer": "Ken Aho ", "Authors@R": "c(person(\"Ken\", \"Aho\", role = c(\"aut\", \"cre\"), email = \"ahoken@isu.edu\"), person(\"Rob\", \"Ramos\", role = \"dtc\"), person(\"Arya\", \"Legg\", role = c(\"dtc\", \"ctb\")), person(\"Connor\", \"Brown\", role = \"ctb\"), person(\"Maggi\", \"Kraft\", role = \"dtc\"), person(c(\"Charles\",\"T.\"), \"Bond\", role = \"dtc\"), person(c(\"Rebecca\",\"L.\"), \"Hale\", role = \"dtc\"))", "VignetteBuilder": "knitr", "Description": "Provides indices and tools for directed acyclic graphs\n(DAGs), particularly DAG representations of intermittent\nstreams. A detailed introduction to the package can be found\nin the publication: \"Non-perennial stream networks as directed\nacyclic graphs: The R-package streamDAG\" (Aho et al., 2023)\n, and in the introductory\npackage vignette.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Config/pak/sysreqs": "bwidget libglpk-dev libxml2-dev libx11-dev", "Repository": "https://moondog1969.r-universe.dev", "Date/Publication": "2025-11-29 19:56:18 UTC", "RemoteUrl": "https://github.com/moondog1969/streamdag", "RemoteRef": "HEAD", "RemoteSha": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:14:23 UTC", "User": "root" }, "Author": "Ken Aho [aut, cre],\nRob Ramos [dtc],\nArya Legg [dtc, ctb],\nConnor Brown [ctb],\nMaggi Kraft [dtc],\nCharles T. Bond [dtc],\nRebecca L. Hale [dtc]", "MD5sum": "db317e7ff563690b1e3e2a5465c46428", "_user": "moondog1969", "_type": "src", "_file": "streamDAG_1.6-1.tar.gz", "_fileid": "1be9b288a65df9f6912f6ce6294d60aa8f3a58ed822fa3b08c9ad4555fdbeee2", "_filesize": 7363700, "_sha256": "1be9b288a65df9f6912f6ce6294d60aa8f3a58ed822fa3b08c9ad4555fdbeee2", "_created": "2026-05-30T09:14:23.000Z", "_published": "2026-05-30T12:45:38.019Z", "_distro": "noble", "_jobs": [ { "job": 78638991982, "time": 241, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7307157233" }, { "job": 78638991978, "time": 292, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7307162061" }, { "job": 78638991974, "time": 238, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7308268579" }, { "job": 78638992005, "time": 169, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7308263872" }, { "job": 78638609366, "time": 443, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307101946" }, { "job": 78638991976, "time": 159, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78638991993, "time": 534, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7307186028" }, { "job": 78638991991, "time": 489, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7307182072" }, { "job": 78638992000, "time": 146, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7307149295" } ], "_buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/moondog1969/streamdag", "_commit": { "id": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "author": "Ken Aho <108488084+moondog1969@users.noreply.github.com>", "committer": "GitHub ", "message": "Add files via upload", "time": 1764446178 }, "_maintainer": { "name": "Ken Aho", "email": "ahoken@isu.edu", "login": "moondog1969", "description": "Ecologist / Statistician", "uuid": 108488084 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "igraph", "role": "Depends" }, { "package": "asbio", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "plotrix", "role": "Imports" }, { "package": "missForest", "role": "Imports" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "sf", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "bookdown", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "ggrepel", "role": "Suggests" } ], "_owner": "moondog1969", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 }, { "week": "2025-42", "n": 14 }, { "week": "2025-48", "n": 14 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "moondog1969", "count": 772, "uuid": 108488084 } ], "_userbio": { "uuid": 108488084, "type": "user", "name": "Ken Aho", "description": "Ecologist / Statistician" }, "_downloads": { "count": 625, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/streamDAG" }, "_devurl": "https://github.com/moondog1969/streamdag", "_searchresults": 12, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/streamDAG.html", "manual.pdf" ], "_homeurl": "https://github.com/moondog1969/streamdag", "_realowner": "moondog1969", "_cranurl": true, "_releases": [ { "version": "1.4-5", "date": "2023-08-21" }, { "version": "1.5", "date": "2023-10-06" }, { "version": "1.5-9", "date": "2025-01-17" }, { "version": "1.6", "date": "2025-10-16" } ], "_exports": [ "A", "A.mult", "arc.pa.from.nodes", "assign_pa_to_segments", "assort", "avg.efficiency", "bern.length", "beta.posterior", "biv.bern", "degree.dists", "delete.arcs.pa", "delete.nodes.pa", "dinvbeta", "efficiency.matrix", "get.AIMS.data", "global.efficiency", "global.summary", "harary", "I.D", "ICSL", "imp.closeness", "isle", "local.summary", "max_r", "min_r", "multi.path.visibility", "n.sources", "n.tot.paths", "path.lengths.sink", "path.visibility", "pinvbeta", "plot_degree.dist", "print.network_to_sf", "R.bounds", "rinvbeta", "sink.G", "size.intact.to.arc", "size.intact.to.node", "size.intact.to.sink", "sources", "spath.lengths", "spatial.plot", "spatial.plot.sf", "STIC.RFimpute", "stream.order", "streamDAGs", "vector_segments" ], "_datasets": [ { "name": "AIMS.node.coords", "title": "Nodal coordinates for graphs in the AIMS project", "object": "AIMS.node.coords", "file": "AIMS.node.coords.rda", "class": [ "data.frame" ], "fields": [ "Object.ID", "lat", "long", "site", "piezo", "microbial_seasonal_network", "STIC_inferred_PA", "New_in_2023" ], "rows": 314, "table": true, "tojson": true }, { "name": "dc_arc_pres_abs", "title": "Stream segment presence absence data for Dry Cr. Idaho", "object": "dc_arc_pres_abs", "file": "dc_arc_pres_abs.rda", "class": [ "data.frame" ], "fields": [ "datetime", "DC10-->C1", "C1-->DC12", "DC11-->C1", "DC12-->C2", "C2-->DC15", "DC13-->C2", "DC15-->C3", "C3-->DC16", "DC14-->C3", "DC16-->C4", "C4-->DC19", "DC17-->C5", "C5-->C4", "DC18-->C5", "DC19-->C6", "C6-->DC4", "DC20-->C6", "DC4-->C7", "C7-->DC5", "DC1-->DC2", "DC2-->DC3", "DC3-->C7", "DC5-->C8", "C8-->DC6", "DC9-->C9", "C9-->DC7", "DC8-->C9", "DC7-->C8" ], "rows": 46187, "table": false, "tojson": true }, { "name": "dc_lengths", "title": "Lengths of Dry Creek stream (arc) segments", "object": "dc_lengths", "file": "dc_lengths.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 39, "table": true, "tojson": true }, { "name": "dc_node_pres_abs", "title": "Stream node presence absence data for Dry Cr. Idaho", "object": "dc_node_pres_abs", "file": "dc_node_pres_abs.rda", "class": [ "data.frame" ], "fields": [ "datetime", "DC10", "C1", "DC11", "DPZ07", "DPZ06", "DC12", "C2", "DC13", "DC15", "C3", "DC14", "DC16", "DPZ05", "C4", "DC17", "C5", "DC18", "DC19", "C6", "DC20", "DC4", "C7", "DC1", "DC2", "DC3", "DC5", "DPZ02", "C8", "DPZ04", "DPZ03", "DC9", "C9", "DC8", "DC7", "DC6", "DSS01" ], "rows": 86958, "table": false, "tojson": true }, { "name": "gj_coords16", "title": "Coordinates of nodes at Gibson Jack Creek, Idaho for a 2016 survey", "object": "gj_coords16", "file": "gj_coords16.rda", "class": [ "data.frame" ], "fields": [ "Object.ID", "lat", "long" ], "rows": 124, "table": true, "tojson": true }, { "name": "gj_lengths", "title": "Lengths of Gibson Jack stream (arc) segments", "object": "gj_lengths", "file": "gj_lengths.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 28, "table": true, "tojson": true }, { "name": "gj_lengths_piezo_full", "title": "Lengths of Gibson Jack stream (arc) segments", "object": "gj_lengths_piezo_full", "file": "gj_lengths_piezo_full.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 35, "table": true, "tojson": true }, { "name": "gj_node_pres_abs", "title": "Stream node presence absence data for Gibson Jack Idaho", "object": "gj_node_pres_abs", "file": "gj_node_pres_abs.rda", "class": [ "data.frame" ], "fields": [ "datetime", "GJ16", "GJ14", "C2", "C3", "C4", "GJ11", "GJ13", "GJ12", "GJ20", "GJ19", "GJ18", "GJ17", "C5", "GJ10", "GJ9", "C6", "GJ23", "GJ22", "C1", "C7", "GJ25", "GJ21", "GJ8", "GJ7", "GJ3", "C8", "GJ6", "GJ5", "GJ4", "GPZ02", "GPZ03", "GPZ04", "GPZ05", "GPZ06", "GPZ07", "GSS01" ], "rows": 68549, "table": false, "tojson": true }, { "name": "gj_node_pres_abs16", "title": "Stream node presence absence data for Gibson Jack Cr. Idaho, for a 2016 survey", "object": "gj_node_pres_abs16", "file": "gj_node_pres_abs16.rda", "class": [ "data.frame" ], "fields": [ "Date", "GJ_ST1_0600", "GJ_ST1_0400", "GJ_ST1_0200", "GJ_ST1_0000", "GJ_SF_2800", "GJ_SF_2600", "GJ_SF_2400", "GJ_SF_2200", "GJ_SF_2000", "GJ_SF_1800", "GJ_SF_1600", "GJ_SF_1400", "GJ_SF_1200", "GJ_SF_1000", "GJ_SF_0800", "GJ_SF_0600", "GJ_SF_0400", "GJ_SF_0200", "GJ_SF_0000", "GJ_NT1_WF_FH", "GJ_NT1_WF_000", "GJ_NT1_0800", "GJ_NT1_0600", "GJ_NT1_0400", "GJ_NT1_0200", "GJ_NT1_0000", "GJ_NT2_1600", "GJ_NT2_1400", "GJ_NT2_1200", "GJ_NT2_1000", "GJ_NT2_0800", "GJ_NT2_0600", "GJ_NT2_0400", "GJ_NT2_0200", "GJ_NT2_0000", "GJ_NT3_0200", "GJ_NT3_0000", "GJ_NT4_0600", "GJ_NT4_0400", "GJ_NT4_0200", "GJ_NT4_0000", "GJ_NF_3800", "GJ_NF_3750", "GJ_NF_3600", "GJ_NF_3400", "GJ_NF_3200", "GJ_NF_3000_CU", "GJ_NF_3000_CD", "GJ_NF_2800_CU", "GJ_NF_2800_CD", "GJ_NF_2600", "GJ_NF_2400_CU", "GJ_NF_2400_CD", "GJ_NF_2200", "GJ_NF_2000", "GJ_NF_1800", "GJ_NF_1600", "GJ_NF_1400", "GJ_NF_1200", "GJ_NF_1060_CU", "GJ_NF_1060_CD", "GJ_NF_1000", "GJ_NF_0800", "GJ_NF_0600", "GJ_NF_0400", "GJ_NF_0200", "GJ_NF_0000", "GJ_MT2_0900", "GJ_MT2_0800", "GJ_MT2_0600", "GJ_MT2_0400", "GJ_MT2_0200", "GJ_MT2_0000", "GJ_MT1_1650", "GJ_MT1_1600", "GJ_MT1_1550", "GJ_MT1_1500", "GJ_MT1_1450", "GJ_MT1_1400", "GJ_MT1_1350", "GJ_MT1_1300", "GJ_MT1_1250", "GJ_MT1_1200", "GJ_MT1_1150", "GJ_MT1_1100", "GJ_MT1_1050", "GJ_MT1_1000", "GJ_MT1_0950", "GJ_MT1_0900", "GJ_MT1_0850", "GJ_MT1_0800", "GJ_MT1_0750", "GJ_MT1_0700", "GJ_MT1_0650", "GJ_MT1_0600", "GJ_MT1_0550", "GJ_MT1_0500", "GJ_MT1_0450", "GJ_MT1_0400", "GJ_MT1_0350", "GJ_MT1_0300", "GJ_MT1_0250", "GJ_MT1_0200", "GJ_MT1_0150", "GJ_MT1_0100", "GJ_MT1_0050", "GJ_MT1_0000", "GJ_MS_3000", "GJ_MS_2800", "GJ_MS_2600", "GJ_MS_2400", "GJ_MS_2200", "GJ_MS_2000", "GJ_MS_1800_CU", "GJ_MS_1800_CD", "GJ_MS_1600", "GJ_MS_1400", "GJ_MS_1200", "GJ_MS_1000", "GJ_MS_0800", "GJ_MS_0600", "GJ_MS_0400", "GJ_MS_0200", "GJ_MS_0000" ], "rows": 3, "table": true, "tojson": true }, { "name": "jd_lengths", "title": "Lengths of Johnson Draw stream (arc) segments", "object": "jd_lengths", "file": "jd_lengths.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 21, "table": true, "tojson": true }, { "name": "jd_lengths_2023", "title": "Lengths of Johnson Draw stream (arc) segments", "object": "jd_lengths_2023", "file": "jd_lengths_2023.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 43, "table": true, "tojson": true }, { "name": "jd_lengths_full", "title": "Lengths of Johnson Draw stream (arc) segments", "object": "jd_lengths_full", "file": "jd_lengths_full.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 28, "table": true, "tojson": true }, { "name": "jd_node_pres_abs", "title": "Stream node presence absence data for Johnson Draw Idaho", "object": "jd_node_pres_abs", "file": "jd_node_pres_abs.rda", "class": [ "data.frame" ], "fields": [ "datetime", "JD1", "JD10", "JD11", "JD12", "JD13", "JD14", "JD15", "JD16", "JD17", "JD18", "JD19", "JD2", "JD20", "JD3", "JD4", "JD5", "JD6", "JD7", "JD8", "JD9", "JSS01", "JPZ02", "JPZ03", "JPZ04", "JPZ05", "JPZ06", "JPZ07", "C1", "C2", "JD21", "JD22", "JD23", "JD25", "JD26", "JD27", "JD28" ], "rows": 51653, "table": false, "tojson": true }, { "name": "kon_coords", "title": "Coordinates of nodes in the Konza Praire dataset", "object": "kon_coords", "file": "kon_coords.rda", "class": [ "data.frame" ], "fields": [ "Object.ID", "lat", "long" ], "rows": 46, "table": true, "tojson": true }, { "name": "kon_lengths", "title": "Lengths of Murphy Cr. stream (arc) segments", "object": "kon_lengths", "file": "kon_lengths.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 45, "table": true, "tojson": true }, { "name": "mur_arc_pres_abs", "title": "Stream segment presence absence data for Murphy Cr. Idaho", "object": "mur_arc_pres_abs", "file": "mur_arc_pres_abs.rda", "class": [ "data.frame" ], "fields": [ "IN_N-->M1984", "M1984-->M1909", "M1909-->M1799", "IN_S-->M1993", "M1993-->M1951", "M1951-->M1909", "M1799-->M1719", "M1719-->M1653", "M1653-->M1572", "M1572-->M1452", "M1452-->M1377", "M1377-->M1254", "M1254-->M1166", "M1166-->M1121", "M1121-->M1036", "M1036-->M918", "M918-->M823", "M823-->M759", "M759-->M716", "M716-->M624", "M624-->M523", "M523-->M454", "M454-->M380", "M380-->M233", "M233-->M153", "M153-->M91", "M91-->OUT" ], "rows": 1000, "table": true, "tojson": true }, { "name": "mur_coords", "title": "Coordinates of nodes at Murphy Ck. Idaho", "object": "mur_coords", "file": "mur_coords.rda", "class": [ "data.frame" ], "fields": [ "Object.ID", "E", "N", "lat", "long" ], "rows": 28, "table": true, "tojson": true }, { "name": "mur_lengths", "title": "Lengths of Murphy Cr. stream (arc) segments", "object": "mur_lengths", "file": "mur_lengths.rda", "class": [ "data.frame" ], "fields": [ "Arcs", "Lengths" ], "rows": 27, "table": true, "tojson": true }, { "name": "mur_node_pres_abs", "title": "Stream node presence absence data for Murphy Cr. Idaho", "object": "mur_node_pres_abs", "file": "mur_node_pres_abs.rda", "class": [ "data.frame" ], "fields": [ "Datetime", "IN_N", "M1984", "M1909", "IN_S", "M1993", "M1951", "M1799", "M1719", "M1653", "M1572", "M1452", "M1377", "M1254", "M1166", "M1121", "M1036", "M918", "M823", "M759", "M716", "M624", "M523", "M454", "M380", "M233", "M153", "M91", "OUT" ], "rows": 1163, "table": true, "tojson": true }, { "name": "mur_seasons_arc_pa", "title": "Simulated seasonal arc presence absence data for Murphy Cr", "object": "mur_seasons_arc_pa", "file": "mur_seasons_arc_pa.rda", "class": [ "data.frame" ], "fields": [ "IN_N -> M1984", "M1984 -> M1909", "M1909 -> M1799", "IN_S -> M1993", "M1993 -> M1951", "M1951 -> M1909", "M1799 -> M1719", "M1719 -> M1653", "M1653 -> M1572", "M1572 -> M1452", "M1452 -> M1377", "M1377 -> M1254", "M1254 -> M1166", "M1166 -> M1121", "M1121 -> M1036", "M1036 -> M918", "M918 -> M823", "M823 -> M759", "M759 -> M716", "M716 -> M624", "M624 -> M523", "M523 -> M454", "M454 -> M380", "M380 -> M233", "M233 -> M153", "M153 -> M91", "M91 -> OUT", "Season" ], "rows": 300, "table": true, "tojson": true } ], "_help": [ { "page": "A", "title": "Arcs of a directed graph", "topics": [ "A" ] }, { "page": "A.mult", "title": "Raise an adjacency matrix to some power", "topics": [ "A.mult" ] }, { "page": "AIMS.node.coords", "title": "Nodal coordinates for graphs in the AIMS project", "topics": [ "AIMS.node.coords" ] }, { "page": "arc.pa.from.nodes", "title": "Obtain arc stream activity outcomes based on bounding nodes", "topics": [ "arc.pa.from.nodes" ] }, { "page": "assort", "title": "Assortativity", "topics": [ "assort" ] }, { "page": "bern.length", "title": "Botter and Durighetto Bernoulli stream length", "topics": [ "bern.length" ] }, { "page": "beta.posterior", "title": "Posterior Beta and Inverse-beta summaries", "topics": [ "beta.posterior" ] }, { "page": "biv.bern", "title": "Bivariate Bernoulli Distribution", "topics": [ "biv.bern" ] }, { "page": "dc_arc_pres_abs", "title": "Stream segment presence absence data for Dry Cr. Idaho", "topics": [ "dc_arc_pres_abs" ] }, { "page": "dc_lengths", "title": "Lengths of Dry Creek stream (arc) segments", "topics": [ "dc_lengths" ] }, { "page": "dc_node_pres_abs", "title": "Stream node presence absence data for Dry Cr. Idaho", "topics": [ "dc_node_pres_abs" ] }, { "page": "degree.dists", "title": "Potential degree distributions", "topics": [ "degree.dists" ] }, { "page": "delete.arcs.pa", "title": "Delete arcs based on presence absence data", "topics": [ "delete.arcs.pa" ] }, { "page": "delete.nodes.pa", "title": "Delete nodes based on presence absence data", "topics": [ "delete.nodes.pa" ] }, { "page": "dinvbeta", "title": "Inverse Beta Distribution", "topics": [ "dinvbeta", "pinvbeta", "rinvbeta" ] }, { "page": "efficiency", "title": "Local and global efficiency", "topics": [ "avg.efficiency", "efficiency.matrix", "global.efficiency" ] }, { "page": "get.AIMS.data", "title": "Loads AIMS dataset associated with a particular AIMS graph", "topics": [ "get.AIMS.data" ] }, { "page": "gj_coords16", "title": "Coordinates of nodes at Gibson Jack Creek, Idaho for a 2016 survey", "topics": [ "gj_coords16" ] }, { "page": "gj_lengths", "title": "Lengths of Gibson Jack stream (arc) segments", "topics": [ "gj_lengths", "gj_lengths_piezo_full" ] }, { "page": "gj_node_pres_abs", "title": "Stream node presence absence data for Gibson Jack Idaho", "topics": [ "gj_node_pres_abs" ] }, { "page": "gj_node_pres_abs16", "title": "Stream node presence absence data for Gibson Jack Cr. Idaho, for a 2016 survey", "topics": [ "gj_node_pres_abs16" ] }, { "page": "global.summary", "title": "Global Summary", "topics": [ "global.summary" ] }, { "page": "harary", "title": "Harary Index", "topics": [ "harary" ] }, { "page": "I.D", "title": "Generalized DAG indices", "topics": [ "I.D" ] }, { "page": "ICSL", "title": "Integral connectivity scale length (ICSL)", "topics": [ "ICSL" ] }, { "page": "imp.closeness", "title": "Improved Closeness Centrality", "topics": [ "imp.closeness" ] }, { "page": "isle", "title": "Detects and defines islands in a streamDAG", "topics": [ "isle" ] }, { "page": "jd_lengths", "title": "Lengths of Johnson Draw stream (arc) segments", "topics": [ "jd_lengths", "jd_lengths_2023", "jd_lengths_full" ] }, { "page": "jd_node_pres_abs", "title": "Stream node presence absence data for Johnson Draw Idaho", "topics": [ "jd_node_pres_abs" ] }, { "page": "konza_coords", "title": "Coordinates of nodes in the Konza Praire dataset", "topics": [ "kon_coords" ] }, { "page": "kon_lengths", "title": "Lengths of Murphy Cr. stream (arc) segments", "topics": [ "kon_lengths" ] }, { "page": "local.summary", "title": "local (nodal) summaries of a DAG", "topics": [ "local.summary" ] }, { "page": "mur_arc_pres_abs", "title": "Stream segment presence absence data for Murphy Cr. Idaho", "topics": [ "mur_arc_pres_abs" ] }, { "page": "mur_coords", "title": "Coordinates of nodes at Murphy Ck. Idaho", "topics": [ "mur_coords" ] }, { "page": "mur_lengths", "title": "Lengths of Murphy Cr. stream (arc) segments", "topics": [ "mur_lengths" ] }, { "page": "mur_node_pres_abs", "title": "Stream node presence absence data for Murphy Cr. Idaho", "topics": [ "mur_node_pres_abs" ] }, { "page": "mur_seasons_arc_pa", "title": "Simulated seasonal arc presence absence data for Murphy Cr", "topics": [ "mur_seasons_arc_pa" ] }, { "page": "n.sources", "title": "Identify source and sink nodes", "topics": [ "n.sources", "sources" ] }, { "page": "path.lengths.sink", "title": "Path Lengths", "topics": [ "path.lengths.sink" ] }, { "page": "multi.path.visibility", "title": "Path Visibilities", "topics": [ "multi.path.visibility", "path.visibility", "visibility" ] }, { "page": "plot_degree.dist", "title": "Plot degree distributions", "topics": [ "plot_degree.dist" ] }, { "page": "R_bounds", "title": "Bounds for the correlation of two (or more) Benrnoulli random variables", "topics": [ "max_r", "min_r", "R.bounds" ] }, { "page": "size.intact.to.arc", "title": "Size of the intact network above an arc", "topics": [ "size.intact.to.arc" ] }, { "page": "intact_to_sink", "title": "Size of intact network that feeds into the sink or a particular node", "topics": [ "size.intact.to.node", "size.intact.to.sink" ] }, { "page": "spath.lengths", "title": "Shortest path lengths and number of paths", "topics": [ "n.tot.paths", "spath.lengths" ] }, { "page": "spatial.plot", "title": "Spatial plot of an igraph object or stream shapefile", "topics": [ "spatial.plot", "spatial.plot.sf" ] }, { "page": "STIC.RFimpute", "title": "A wrapper for missForest for random forest STIC imputation", "topics": [ "STIC.RFimpute" ] }, { "page": "stream.order", "title": "Strahler or Shreve stream order of a stream DAG", "topics": [ "sink.G", "stream.order" ] }, { "page": "streamDAGs", "title": "Stream DAG datasets", "topics": [ "streamDAGs" ] }, { "page": "vector_segments", "title": "Functions for overlaying networks on shapefiles", "topics": [ "assign_pa_to_segments", "print.network_to_sf", "vector_segments" ] } ], "_readme": "https://github.com/moondog1969/streamdag/raw/HEAD/README.md", "_rundeps": [ "asbio", "cachem", "cli", "codetools", "cpp11", "deSolve", "digest", "doRNG", "fastmap", "foreach", "glue", "gWidgets2", "gWidgets2tcltk", "igraph", "iterators", "itertools", "lattice", "lifecycle", "magrittr", "Matrix", "memoise", "missForest", "multcompView", "mvtnorm", "pixmap", "pkgconfig", "plotrix", "randomForest", "ranger", "rbibutils", "Rcpp", "RcppEigen", "Rdpack", "rlang", "rngtools", "scatterplot3d", "tkrplot", "vctrs" ], "_vignettes": [ { "source": "alpha-centrality.Rnw", "filename": "alpha-centrality.pdf", "title": "Alpha-centrality for stream DAGs", "engine": "knitr::knitr", "headings": [], "created": "2025-10-13 17:27:31", "modified": "2025-11-29 19:55:26", "commits": 3 }, { "source": "streamDAG.Rmd", "filename": "streamDAG.html", "title": "Introduction to streamDAG", "author": "Ken Aho", "engine": "knitr::rmarkdown", "headings": [ "Introductory Examples of Usage", "Murphy Creek", "Spatial Plots", "Note that the directory \"shape\" also contains required ARC-GIS .shx,.cpg, and .prj files.", "some ggplot customizations", "theme used throughout vignette", "Global measures", "walk global.summary through node presence / absence data", "standardize measures", "Local measures", "Bayesian Extensions", "Konza Prairie", "Unweighted Local Measures", "Unweighted Global Measures", "Estimating Arc Stream Presence Outcomes" ], "created": "2023-05-30 17:22:06", "modified": "2025-11-29 19:55:26", "commits": 47 } ], "_score": 4.556302500767288, "_indexed": true, "_nocasepkg": "streamdag", "_universes": [ "moondog1969" ], "_binaries": [ { "r": "4.5.1", "os": "wasm", "version": "1.6-1", "date": "2026-03-30T09:40:11.000Z", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "692c54fc32ee1b32fc09e2b233233e1d280be90319966bd95e52d6e6a515092c", "status": "success", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/23737790359" }, { "r": "4.7.0", "os": "linux", "version": "1.6-1", "date": "2026-05-30T09:23:13.000Z", "distro": "noble", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "3c936738fbcf520a373d3382df0a466051fd304c02bea761a8544bf1a5c7e67a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" }, { "r": "4.6.0", "os": "linux", "version": "1.6-1", "date": "2026-05-30T09:24:12.000Z", "distro": "noble", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "4754d083dcd6c5baa7bd6056f5f16dad859aeb63acee31baf7cce5d7e89b2e60", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" }, { "r": "4.5.3", "os": "mac", "version": "1.6-1", "date": "2026-05-30T12:43:26.000Z", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "9cba3c4c075bda31f2da19487ad61d3bc9a8d47eb133646e0cee915da6bc2e65", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" }, { "r": "4.6.0", "os": "mac", "version": "1.6-1", "date": "2026-05-30T12:43:06.000Z", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "fc3165a5897932b209c5398db42940620e1dff5d24076722dfdaa753dfa4affb", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" }, { "r": "4.7.0", "os": "win", "version": "1.6-1", "date": "2026-05-30T09:28:34.000Z", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "a34af3514b3e9e218be02d0cd5cf5258003f68d8101a19118447a8f97b8fef63", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" }, { "r": "4.5.3", "os": "win", "version": "1.6-1", "date": "2026-05-30T09:28:00.000Z", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "9805b7b05f620d81d7f0a6fefb997e1de325ab18407aa5739b4fbf6ce8df0d92", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" }, { "r": "4.6.0", "os": "win", "version": "1.6-1", "date": "2026-05-30T09:22:36.000Z", "commit": "c79ebca33140087ee6cd4b1608f1e9c4069a25f2", "fileid": "776091250486bb2047aa1becc847ed5eec70dd5316da2bbf80297594ac85f3a1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/moondog1969/actions/runs/26657767309" } ] }